Genomic Dataset and Variant Calling Outputs of Clinical Klebsiella pneumoniae Species Complex Isolates from Southeast Asia
This dataset repository houses the processed genomic outputs and reproducibility resources for 20 clinical isolates from the Klebsiella pneumoniae species complex (KpSC) in Southeast Asia (Malaysia, Indonesia, Thailand, and Vietnam).The dataset supports a study aimed at validating species-level classifications (such as the taxonomic verification of Klebsiella quasipneumoniae isolates) and profiling critical chromosomal and plasmid-mediated antimicrobial resistance markers.Included in this Figshare package are the de novo genome assemblies, strain typing profiles, AMR gene annotation tables, quality control reports, core-genome SNP tree data, and high-resolution publication figures (including SNP distance and Jaccard-clustered resistome heatmaps). The underlying Snakemake workflow and custom Python analysis scripts are permanently archived on Zenodo (DOI: 10.5281/zenodo.20742385).